Does Applied Researchers reduce Repeat, Flow, and Deflect costs?
Yes, provided Applied Researchers is [Empowered] and the cost belongs to a spell. Its [Empowered] ability grants this discount only while it has the [Empowered] status.828.1.b.1
[Repeat] is an optional additional cost.820.1 [Deflect] imposes a mandatory additional cost on a spell or ability that targets the permanent with [Deflect].809.1.d Discounts can reduce both kinds of additional costs, including to zero.356.4.f
A [Flow] cost is an alternate cost that replaces a spell's base cost during finalization.829.1.c.1 Applied Researchers' discount is applied afterward when determining the spell's total cost.356.1356.4
Because Applied Researchers' discount applies only to spells, it cannot reduce a [Repeat] or [Deflect] cost paid while playing an ability.820.1.a809.1.d